Semantic cluster achievements

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Contents

The Big Picture

Overview of the main steps, enlarge to get full size schema




Activities (period 1, 2, 3)

Task id

Task name

WP/Task

Achieved

Lead

Data sources / Dependencies

Next data sources

Technology

Period

Priority

Difficulty

A- RDF HARMONIZATION AND MAPPING

A-1

iMarine Top Level Ontology Definition

T3.3

Ongoing

FORTH

FAO

IRD

FLOD schema and Ecoscope schema and CIDOC ??

DC, FOAF, GENESI-DEC, .. ??

Discussions

1,2,3

+++

+++

A-2

iMarine TLO RDF Schema

T3.3

Ongoing

FORTH

???


RDF / OWL

1,2,3

+++

???

A-3

FLOD and TLO mapping

T3.3

NO

FAO

???


??

2

+++

+

A-4

Ecoscope and TLO mapping

T3.3

NO

IRD

DC, FOAF, GENESI-DEC, SKOS, ICAL


RDF / OWL

2

+++

+

B- RDF GENERATION FROM DATA SOURCES

B-1

FLOD Knowledge Base


YES

FAO

CSV, Publications, ???

??? Smartfish??

Java

1

++

+++

B-2

Ecoscope Knowledge Base


YES

IRD

Relationnal databases, pictures, agents, publications, spatial information..

Bibliographic references (B-3), new databases.

Java, Php

1

++

+++

B-3

iMarine annotator (similar as D-11 without GUIS)


NO

FORTH

* IRD bibliographic references (RDF export from ZOTERO)

* IRD reports, pdf and doc files without bibliographic references,

*FAO ?

* external bibliographic references from partners (RFMOS, ...)

FORTH entity mining application

2

+++

???

B-4

iMarine Knowledge Base

WP3, WP10, and …WPXXX

NO

CNR (who ?)

FORTH ?

* Geonetwork metadata of Geospatial cluster,

* Species Browser / Manager

* Codelist manager,


Terradue XSL (GENESI-DEC RDF schema)

TLO RDF schema

2,3

+++

???

C- RDF STORAGE AND ACCESS

C-1

FLOD triple store & SPARQL endpoint


YES

FAO

RDF from B-1, B-3


Quad store (TDB), Joseki

1

++

++

C-2

Ecoscope triple store & SPARQL endpoints


YES

IRD

RDF from B-2, B-3


Triple store (TDB), Joseki

1

++

++

C-3

iMarine triple store & SPARQL endpoint


NO

CNR ?

RDF from B-4, B-3


Java, Jena, Quad store (TDB), Joseki

2

+++

+

C-4

FLOD opensearch


Ongoing

FAO

RDF from C-1



1

++


C-5

Ecoscope opensearch


YES

IRD

RDF from C-2


Java

1

++


C-6

iMarine opensearch


NO

CNR ?

RDF from C-3


Java

3

+++


C-7

XSearch configurability (OpenSearch, categories, SPARQL endpoints)

T10.4

Yes

FORTH



Java, JSP

1



C-8

XSearch over gCube Search (exploits iMarine resutls)

T10.4

Yes

FORTH, NKUA

gCubeSearch


Java, JSP, GWT

1



C-9

XSearch 1s portlet version (supports snippets-title entity mining/clustering)

T10.4

Yes

FORTH, NKUA

gCubeSearch, C-11


Java, JSP, GWT

1



C-10

XSearch 2nd portlet verion (Exploitation of LinkedData)

T10,4

No

FORTH, NKUA,CNR, FAO, IRD

gCubeSearch, C-11, C-3


Java, JSP, GWT

2



C-11

XSearch as a service (deployed in iMarine infrastructure)

WP10, WP11

Yes

FORTH

NKUA APIs


JAVA, JSP

1



C-12

XSearch and gCubeSearch (various issues)

WP10, WP11

Ongoing

FORTH, NKUA




2,3

+++

+++

C-13

XSearch that exploits objects associations (TLO-connected)







2,3



D- RDF CLIENTS

D-1

Bookmarklet: hihglighting of terms with FLOD SPARQL endpoint

T10.4

YES

FORTH

Any terms in Web pages related to concepts described with C-1 & C-2 & C-3


?

&

FORTH entity mining

1

+

???

D-2

FLOD search engine


YES

FAO

C-1 & C-4


???

1

+

+

D-3

Eoscope search engine


YES

IRD

C-2 & C-5


Home made

1

+


D-4

xSearch search engine on FLOD

T10.4

YES

FORTH

C-1 & C-4


?

&

FORTH entity mining

1

++

+

D-5

xSearch search engine on Ecoscope html opensearch

T10.4

YES

FORTH

C-2 & C-5


Opensearch html

&

FORTH entity mining

1

++

+

D-6

xSearch search engine on iMarine RDF opensearch


NO

FORTH

C-3 & C-6


Opensearch RDF

&

FORTH entity mining

2,3

+++

+

D-7

iMarine search engine


NO

FORTH

C-3 & C-6, C-2 & C-5, C-1 & C-4



2,3

+++

???

D-8

Fact sheet demonstrator on top of Ecoscope and FLOD


YES

IRD



Javascript

1

+

++

D-9

D-8 with TLO


NO

IRD

FAO

Depends on A-3 & A-4


??

2

++

++

D-10

Imarine fact sheet generator with TLO


YES

IRD

FAO

C-3 & C-6, C-2 & C-5, C-1 & C-4


??

3

+++

++

D-11

iMarine tagger (like Agrotagger), similar as B-3 with GUIS (reusing D-1).

?T10.4

NO

CNR (VRE?)

FORTH

Any PDF or DOC file, Zotero RDF export..

tagging with with C-1 & C-2 & C-3.

Other kinds of data formats ?

FORTH entity mining.

VRE?

2

++

+

D-12

iMarine match entities service (cf WoRMS "match taxa")


NO

IRD

CNR (VRE?)

FLOD SPARQL endpoint

Ecoscope SPARQL endpoint

iMarine SPARQL endpoint

Java / Jena.

VRE?

2,3

++

+


VRE’s for the semantic cluster ?










End User Products

List of demonstrations related with Semantic cluster endproducts
Name Description Links Status Next Steps
XSearch A document with links to prototypes is available at

http://bscw.research-infrastructures.eu/bscw/bscw.cgi/d258140/XSearch%20PrototypesYear1.docx

links Status Next steps
Fact sheet generator Fact sheet generator of Ecoscope used on top of both Ecoscope and FLOD SPARQL endpoints. In this demo, Ecoscope is collecting taxon ranks from Worms made available by FLOD through a SPARQL query <A href="http://www.ecoscopebc.ird.fr/EcoscopeKB/ShowResource.action?resourceUri=http%3A%2F%2Fwww.ecoscope.org%2Fontologies%2Fecosystems%23elagatis_bipinnulata&request_locale=en_EN">See online example here</A> First step Same demo with a SPARQL query using TLO classes and properties.
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