2014.06 WP6: Virtual Research Environments Deployment and Operation Monthly Activity By Task and Beneficiary

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=== IRD Activities ===
=== IRD Activities ===
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''The beneficiary should report here a summary of the activities performed in the reporting period ''
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''Two kind of activities have been performed: improvement of R script for biological observations enrichment and annotation of Zotero bibliographic references in RDF with Ecoscope/TLO URIs''
<xh4> Deviations and Corrective Actions </xh4>
<xh4> Deviations and Corrective Actions </xh4>
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<xh4> Achievements </xh4>
<xh4> Achievements </xh4>
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''The beneficiary should report here a bullet list highlighting the main achievements of the reporting period''
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''Main achievements for Biological observations enrichment are''
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* a new parameter has been added ('InsertTime' to enable the users to specify a given date or period when geometries don't have this kind of attribute. For example, it enables to calculate the mean temperature for EEZ or Longhhurst provinces (which are not related to / delivered with temporal attributes),
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* enabling new data formats as input parameters (WFS, shape...)
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* when environmental data are not covering all features, the process doesn't stop anymore and returns instead a "-99999' value for non covered / overlapped features.
 +
* enabling new data formats for outputs
 +
* the process can be now executed on the WPS server (example of execute process with longurst provinces provided by WFS and SST data provided by OPeNDAP)
 +
* For now WPS result is provided as CSV / text file
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''Main achievements for Zotero RDF bibliographic references''
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* name of authors are turned in URIs by using foaf:person instances of Ecoscope
 +
* first version of a script enabling the text mining of title and description (Dublin Core elements) and transformation of relevant terms in URIs (related to Ecoscope and TLO URIs: species...)
 +
* a first Lucene index of Zotero RDF bibliographic has been made (will be reused lated to add new concepts)
== T6.3 Virtual Research Environments Common Interfaces and Tools ==
== T6.3 Virtual Research Environments Common Interfaces and Tools ==

Revision as of 15:51, 3 July 2014

Contents

This WP6 Activity Report described the activities performed in June 2014 by Beneficiary and Task.

It is part of June '14 Monthly Activity Report.

T6.1 Virtual Research Environments Operation

CNR Activities

The beneficiary should report here a summary of the activities performed in the reporting period


The beneficiary should report here major issues faced in the reporting period and the identified corrective actions, if any.


The beneficiary should report here a bullet list highlighting the main achievements of the reporting period

FAO Activities

The beneficiary should report here a summary of the activities performed in the reporting period


The beneficiary should report here major issues faced in the reporting period and the identified corrective actions, if any.


The beneficiary should report here a bullet list highlighting the main achievements of the reporting period

T6.2 Virtual Research Environments Resources and Tools Provision

FAO Activities

The beneficiary should report here a summary of the activities performed in the reporting period


The beneficiary should report here major issues faced in the reporting period and the identified corrective actions, if any.


The beneficiary should report here a bullet list highlighting the main achievements of the reporting period

ERCIM Activities

The beneficiary should report here a summary of the activities performed in the reporting period


The beneficiary should report here major issues faced in the reporting period and the identified corrective actions, if any.


The beneficiary should report here a bullet list highlighting the main achievements of the reporting period

CNR Activities

In the month of July CNR worked on several enhancements of the Statistical Manager at both service and interface sides. A widget version of the portlet was finalized #1297, file importing now allows to take resources from the workspace #2920, requests for algorithms running on D4Science have been better managed #2860 #2858 and errors from the algorithms are now reported to the interface #2859.

Furthermore, CNR built a WPS interface for the Statistical Manager, which was certified (for the BiOnym algorithm) by the Taverna Development Team #2792. Finally, activities on infrastructural database management were completed at backend side #2770. The development of a portlet for such system has started #2960.


No deviations to report.


  • Enhancements on the Statistical Manager Portlet and Service
  • WPS interface for BiOnym
  • Development of the Database Management facilities achieved a major release

FIN Activities

The beneficiary should report here a summary of the activities performed in the reporting period


The beneficiary should report here major issues faced in the reporting period and the identified corrective actions, if any.


The beneficiary should report here a bullet list highlighting the main achievements of the reporting period

UNESCO Activities

The beneficiary should report here a summary of the activities performed in the reporting period


The beneficiary should report here major issues faced in the reporting period and the identified corrective actions, if any.


The beneficiary should report here a bullet list highlighting the main achievements of the reporting period

CRIA Activities

The beneficiary should report here a summary of the activities performed in the reporting period


The beneficiary should report here major issues faced in the reporting period and the identified corrective actions, if any.


The beneficiary should report here a bullet list highlighting the main achievements of the reporting period

IRD Activities

Two kind of activities have been performed: improvement of R script for biological observations enrichment and annotation of Zotero bibliographic references in RDF with Ecoscope/TLO URIs


The beneficiary should report here major issues faced in the reporting period and the identified corrective actions, if any.


Main achievements for Biological observations enrichment are

  • a new parameter has been added ('InsertTime' to enable the users to specify a given date or period when geometries don't have this kind of attribute. For example, it enables to calculate the mean temperature for EEZ or Longhhurst provinces (which are not related to / delivered with temporal attributes),
  • enabling new data formats as input parameters (WFS, shape...)
  • when environmental data are not covering all features, the process doesn't stop anymore and returns instead a "-99999' value for non covered / overlapped features.
  • enabling new data formats for outputs
  • the process can be now executed on the WPS server (example of execute process with longurst provinces provided by WFS and SST data provided by OPeNDAP)
  • For now WPS result is provided as CSV / text file

Main achievements for Zotero RDF bibliographic references

  • name of authors are turned in URIs by using foaf:person instances of Ecoscope
  • first version of a script enabling the text mining of title and description (Dublin Core elements) and transformation of relevant terms in URIs (related to Ecoscope and TLO URIs: species...)
  • a first Lucene index of Zotero RDF bibliographic has been made (will be reused lated to add new concepts)

T6.3 Virtual Research Environments Common Interfaces and Tools

CNR Activities

During the month of July, CNR aided FAO in the import of the SPREAD R-scripts on the infrastructure #2900. Furthermore, activities regarded possible stakeholders requirements coming from IOTC, ICES and NEAFC. Procedures from the Statistical Manager were used for stakeholders' datasets #2861#2793 #2938. Eventually, the activity resulted in the creation of two wiki pages and in a sequence of conference calls with these possible stakeholders.

Finally, CNR continued supporting and developing BiOnym #2016. An official technical report has been produced, which describes many details of this activity #techrep. The BiOnym portlet developed by FIN is now linked on the production portal of i-Marine.

On Tabular Data component:

  • Completed activity on "Task Widget" #2819
  • Completed Split and Merge operations #2834
  • Realized Group By" operation #2892

On Workspace Sharing Widget component:

  • Integrated sharing with groups #2897

On Workspace component:

  • Fixed: not enough space to display the full group name #2797


No deviations to report.


  • Analysis for IOTC was produced
  • Analysis for NEAFC\ICES data was produced
  • A technical report was produced for BiOnym

NKUA Activities

NKUA activities for this period include:

  • IRBootstrapper portlet has been enhanced to support the creation of the SRU collection resources. Moreover it now offers a task for indexing Relational DBs. The DB info is available as a Generic Resource on IS (Related ticket: #2953)
  • UsersManagement portlet has been enhanced to make the shown grid able to show a lot of different columns. (Related ticket: #2954)
  • tagcloud-visualisation-widget has been enhanced to display a loading icon until the data are visualized and showing several notifications in case of failure. (Related ticket: #2952)


NONE


Several portlets have been released in the 3.2 release:

  • org.gcube.portlets-user.search-portlet.3-4-0
  • org.gcube.portlets-user.results-portlet.5-5-0
  • org.gcube.portlets-widgets.tagcloud-visualisation-widget.1-0-0
  • org.gcube.portlets-admin.search-manager-portlet.1-6-0
  • org.gcube.portlets-admin.ir-bootstrapper-portlet.2-7-0
  • org.gcube.portlets-admin.elastic-search-portlet.1-1-0
  • org.gcube.portlets-admin.ft-index-management-portlet.2-3-1
  • org.gcube.portlets-admin.users-management-portlet.2-2-0

T6.4 Virtual Research Environments Development Support

NKUA Activities

The beneficiary should report here a summary of the activities performed in the reporting period


The beneficiary should report here major issues faced in the reporting period and the identified corrective actions, if any.


The beneficiary should report here a bullet list highlighting the main achievements of the reporting period

CNR Activities

The beneficiary should report here a summary of the activities performed in the reporting period


The beneficiary should report here major issues faced in the reporting period and the identified corrective actions, if any.


The beneficiary should report here a bullet list highlighting the main achievements of the reporting period

T6.5 Serving New Scenarios

CNR Activities

The beneficiary should report here a summary of the activities performed in the reporting period


The beneficiary should report here major issues faced in the reporting period and the identified corrective actions, if any.


The beneficiary should report here a bullet list highlighting the main achievements of the reporting period

FAO Activities

The beneficiary should report here a summary of the activities performed in the reporting period


The beneficiary should report here major issues faced in the reporting period and the identified corrective actions, if any.


The beneficiary should report here a bullet list highlighting the main achievements of the reporting period

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